TABLE 1

Detection of antimicrobial resistance genes in patient A metagenome using ABRicatea

ContigbStart
(bp)
End
(bp)
GenecIdentity
(%)
GenBank
accession no.
FM_48272,1503,076sul1_2100CP002151
FM_10351,080811,689blaKPC-2_1100AY034847
FM_10747,2758,135blaSHV-12_1100AF462395
FM_100441861,001aph(3′)-Ia_1100V00359
FM_4522,206022,866vanY-B_1100AF192329
FM_7841,576316,260dfrG_1100AB205645
FM_3136,89410,046oqxB_1100EU370913
FM_3131,007011,245oqxA_1100EU370913
FM_23522,9334,853tet(W)_499.9AJ427422
FM_1087034873blaOXA-9_299.9JF703130
FM_90511611,381tet(40)_199.8FJ158002
FM_74531,0681,565dfrA12_199.8AB571791
FM_1207299965aadE_199.8KF864551
FM_4522,054621,889vanS-B_199.6AF192329
FM_4522,370824,679vanH-B_199.4AF192329
FM_4521,988420,546vanR-B_199.2AF192329
FM_4522,467225,700vanA-B_198.9AF192329
FM_1376,3697,847msr(C)_198.9AY004350
FM_25525,33825,757fosA_398.6NZ_ACWO01000079
FM_45222,88423,711vanW-B_197.6AF192329
FM_45225,70626,314vanX-B_196.7AF192329
  • a Data represent 100% coverage with no gaps.

  • b In the designations in column 1, “FM” represents the fecal metagenome of patient A and the number that follows “FM” represents the associated metagenomic contig number.

  • c ResFinder database.