TABLE 2

Candidate genes tagged by variants in LD groups that explained more variation than expected based on the empirical null distribution (see Fig. S7 for QQ-plots)

TraitRepliconPositiondAnnotation (MaGea locus tag)
2-AminoethanolpSymA52580fixI: nitrogen fixation protein FixI (SMEL_v1_mpb0065)
Formic acidpSymA38256napA: nitrate reductase, periplasmic, large subunit (SMEL_v1_mpb0048)
GentamicinpSymA796714Transcriptional regulator, ROK family (SMEL_v1_mpb0963)
pSymA263510nifH: nitrogenase Fe protein (SMEL_v1_mpb0322)
pSymA282760Putative aldehyde dehydrogenase (SMEL_v1_mpb0345)
SpectinomycinpSymAPAVConserved protein of unknown function (SMEL_v1_mpb0259)
StreptomycinChrom.PAVMultisensor signal transduction histidine kinase (SMEL_v1_0575)
DesiccationpSymB1161576Putative aldehyde or xanthine dehydrogenase (SMEL_v1_mpa1160)
A17 biomasspSymA269841nifA: Nif-specific regulatory protein (SMEL_v1_mpb0330)
269869
270090
270096
270157
270283
270292
pSymA271348nifA: (SMEL_v1_mpb0330); unknown (SMEL_v1_mpb0331)
pSymA274195Unannotated
pSymA276359gabD: succinate-semialdehyde dehydrogenase I, NADP-dependent (SMEL_v1_mpb0338)
276443
276563
pSymB1231268queC: 7-cyano-7-deazaguanine synthase (SMEL_v1_mpa1230)
pSymB1376015Diguanylate cyclase/phosphodiesterase (SMEL_v1_mpa1374)
pSymB669804Sulfotransferase family (SMEL_v1_mpa0678)
R108 biomasspSymA305290fixN: cytochrome c oxidase subunit 1 homolog (SMEL_v1_mpb0374)
305308
305353
AMTbpSymA648346Diguanylate cyclase/phosphodiesterase (SMEL_v1_mpb0802)
649133
APcpSymAPAVfixS: FixS2 nitrogen fixation protein (SMEL_v1_mpb0492)