TABLE 3

For most traits, phenotypic variance explained by genome-wide relatedness (“PVE LMM”) was greater than the phenotypic variance explained by just the top variants

TraitPVE top variantsaPVE LMMb
2-Aminoethanol0.050.00
Gentamicin resistance0.140.49
Spectinomycin resistance0.430.50
Streptomycin resistance0.340.58
Annual mean temperature0.090.12
Annual precipitation0.100.23
Formic acid0.080.30
Desiccation tolerance0.190.31
A17 biomass0.330.74
R108 biomass0.190.53
R108 nodule number0.060.19
  • a Maximum cumulative PVE among 1 to 25 variants chosen by model selection after subtracting the median of the empirical null distribution obtained from random permutations.

  • b After subtracting median of the null distribution.