TABLE 1

C. gattii VGII sample genomes used in this study, including 22 newly sequenced and 112 previously published genomes

SampleGenotypeLocationSourceYr of
isolation
Accession no.
BioProjectaBioSample
R265VGIIaCanadaHuman2001PRJNA244927SAMN02851006
B6864VGIIaOregonHuman2004PRJNA244927SAMN02850991
B7422VGIIaOregonCat2009PRJNA244927SAMN02850993
B7436VGIIaCaliforniaAlpaca2009PRJNA244927SAMN02850994
B8555VGIIaWashingtonHuman2006PRJNA244927SAMN02850996
B8793VGIIaOregonDog2010PRJNA244927SAMN02850998
CA 1014VGIIaCaliforniaHumanNAbPRJNA244927SAMN02851004
ICB 107VGIIaBrazilHuman1981PRJNA244927SAMN02851017
NIH 444VGIIaWashingtonHuman1972PRJNA244927SAMN02851012
B7395VGIIaWashingtonDog2008PRJNA244927SAMN02850992
B7467VGIIaOregonPorpoise2009PRJNA244927SAMN02850995
B8577VGIIaCanadaEnvironmental2009PRJNA244927SAMN02850997
B8849VGIIaOregonEnvironmental2010PRJNA244927SAMN02850999
B11428VGIIaWashingtonHuman2015PRJNA388113SAMN07738523
B11460VGIIaCaliforniaHuman2016PRJNA388113SAMN07738524
B11560VGIIaOregonFerret2016PRJNA388113SAMN07738525
B11562VGIIaWashingtonHuman2016PRJNA388113SAMN07738526
B11566VGIIaQuébecBird2015PRJNA388113SAMN07738527
B11569VGIIaQuébecHuman2015PRJNA388113SAMN07738528
B9457VGIIaOregonHuman2011PRJNA244927SAMN02851000
B9458VGIIaOregonHuman2011PRJNA244927SAMN02851001
B9757VGIIaCanadaEnvironmental2002PRJNA244927SAMN02851002
B9759VGIIaCanadaCat2003PRJNA244927SAMN02851003
WM 03.697VGIIaCanadaVeterinary2001PRJNA244927SAMN02851013
WM 05.432VGIIaJapan/BrazilHuman2000PRJNA244927SAMN02851014
WM 05.554VGIIaBrazilHuman2002PRJNA244927SAMN02851015
WM 06.10VGIIaArgentinaHuman2000PRJNA244927SAMN02851016
WM 09.144VGIIaCanadaHuman2006PRJNA388113SAMN07738529
HL A11VGIIaCanadaHuman2001PRJNA244927SAMN02851009
HL A1VGIIaCanadaVeterinary2002PRJNA244927SAMN02851007
HL A3VGIIaCanadaEnvironmental2002PRJNA244927SAMN02851008
HL B5VGIIaCanadaHuman2002PRJNA244927SAMN02851010
HL B6VGIIaCanadaHuman2007PRJNA244927SAMN02851011
HL B8VGIIaCanadaHuman2002PRJNA388113SAMN07738530
B7735VGIIbOregonHuman2009PRJNA244927SAMN02851019
B8554VGIIbOregonDog2008PRJNA244927SAMN02851020
B8828VGIIbWashingtonPorpoise2010PRJNA244927SAMN02851021
B11567VGIIbNS, CanadacDeer2015PRJNA388113SAMN07738531
B7394VGIIbWashingtonCat2008PRJNA244927SAMN02851018
B7735VGIIbOregonHuman2009PRJNA244927SAMN02851019
B9157VGIIbWashingtonHorse2011PRJNA244927SAMN02851022
B9552VGIIbWashingtonPorpoise2011PRJNA244927SAMN02851023
B9563VGIIbWashingtonPorpoise2011PRJNA244927SAMN02851024
B9588VGIIbFloridaHuman2012PRJNA244927SAMN02851025
B9758VGIIbCanadaEnvironmental2002PRJNA244927SAMN02851026
WM 03.27VGIIbAustraliaEnvironmental1992PRJNA244927SAMN02851029
WM 04.71VGIIbAustraliaVeterinary1991PRJNA244927SAMN02851030
WM 04.75VGIIbThailandHuman1993PRJNA244927SAMN02851034
WM 05.465VGIIbBrazilHuman1997PRJNA244927SAMN02851031
WM 06.634VGIIbThailandHuman1994PRJNA244927SAMN02851032
WM 06.636VGIIbThailandHuman1995PRJNA244927SAMN02851033
WM 2552VGIIbMalaysiaHuman1997PRJNA244927SAMN02851028
B7434VGIIcOregonHuman2008PRJNA244927SAMN02851037
B7491VGIIcOregonHuman2009PRJNA244927SAMN02851039
B7493VGIIcOregonSheep2009PRJNA244927SAMN02851040
B7641VGIIcOregonCat2008PRJNA244927SAMN02851041
B7765VGIIcOregonDog2009PRJNA244927SAMN02851043
B8210VGIIcOregonHuman2008PRJNA244927SAMN02851044
B8214VGIIcOregonHuman2009PRJNA244927SAMN02851045
B8510VGIIcOregonHuman2009PRJNA244927SAMN02851046
B8788VGIIcOregonHuman2010PRJNA244927SAMN02851048
B8798VGIIcOregonHuman2005PRJNA244927SAMN02851049
B8833VGIIcOregonCat2010PRJNA244927SAMN02851051
B7390VGIIcIdahoHuman2008PRJNA244927SAMN02851059
B7432VGIIcOregonHuman2009PRJNA244927SAMN02851036
B6863VGIIcOregonHuman2005PRJNA244927SAMN02851035
B7466VGIIcOregonCat2008PRJNA244927SAMN02851038
B7737VGIIcOregonHuman2009PRJNA244927SAMN02851042
B8571VGIIcWashingtonHuman2009PRJNA244927SAMN02851047
B8838VGIIcWashingtonHuman2010PRJNA244927SAMN02851052
B8843VGIIcOregonHuman2010PRJNA244927SAMN02851053
B11352VGIIcOregonHuman2015PRJNA388113SAMN07738532
B11442VGIIcOregonElk2016PRJNA388113SAMN07738533
B11468VGIIcOregonHuman2016PRJNA388113SAMN07738534
B11473VGIIcOregonDog2016PRJNA388113SAMN07738535
B11592VGIIcOregonCat2016PRJNA388113SAMN07738536
B8825VGIIcOregonHuman2010PRJNA244927SAMN02851050
B9933VGIIcOregonHuman2012PRJNA244927SAMN02851055
HL B3VGIIcOregonHuman2007PRJNA244927SAMN02851057
HL B4VGIIcOregonHuman2008PRJNA244927SAMN02851058
B11441VGIIOregonElk2016PRJNA388113SAMN07738537
B11591VGIIOregonDog2016PRJNA388113SAMN07738538
B11766VGIIN. CarolinadHuman2016PRJNA388113SAMN07738539
IAL3225VGIIBrazilHuman1994PRJNA244927SAMN02851062
IAL3234VGIIBrazilHuman1998PRJNA244927SAMN02851063
IAL3243VGIIBrazilHuman2000PRJNA244927SAMN02851064
B8973VGIIHawaiiHuman2010PRJNA244927SAMN02851060
B9764VGIIWashingtonCat2012PRJNA244927SAMN02851061
B9816VGIIOregonCat2012PRJNA244927SAMN02851054
WM 04.78VGIIColombiaHuman1998PRJNA244927SAMN02851077
WM 04.84VGIIBrazilHuman1986PRJNA244927SAMN02851078
WM 05.274VGIIColombiaHuman2002PRJNA244927SAMN02851079
WM 05.275VGIIColombiaHuman2001PRJNA244927SAMN02851080
WM 05.339VGIIColombiaHuman2005PRJNA244927SAMN02851081
WM 05.342VGIIColombiaHuman2005PRJNA244927SAMN02851082
WM 05.419VGIIBrazilHuman1988PRJNA244927SAMN02851083
WM 05.452VGIIBrazilHuman1995PRJNA244927SAMN02851084
WM 05.456VGIIBrazilEnvironmental1994PRJNA244927SAMN02851085
WM 05.457VGIIBrazilHuman1995PRJNA244927SAMN02851086
WM 05.461VGIIBrazilHuman1997PRJNA244927SAMN02851087
WM 05.462VGIIBrazilHuman1997PRJNA244927SAMN02851088
WM 05.525VGIIBrazilHuman1997PRJNA244927SAMN02851089
WM 05.527VGIIBrazilHuman1997PRJNA244927SAMN02851090
WM 05.528VGIIBrazilHuman2001PRJNA244927SAMN02851091
WM 05.529VGIIBrazilHuman1997PRJNA244927SAMN02851092
WM 05.530VGIIBrazilHuman1999PRJNA244927SAMN02851093
WM 05.533VGIIBrazilHuman1997PRJNA244927SAMN02851094
WM 05.536VGIIBrazilHuman1997PRJNA244927SAMN02851095
WM 05.545VGIIBrazilHuman2001PRJNA244927SAMN02851096
WM 05.546VGIIBrazilHuman2001PRJNA244927SAMN02851097
WM 05.547VGIIBrazilHuman2001PRJNA244927SAMN02851098
WM 05.76VGIIGreeceHuman1996PRJNA388113SAMN07738540
WM 05.77VGIIGreeceHuman1998PRJNA388113SAMN07738541
WM 06.12VGIIVenezuelaHuman1996PRJNA244927SAMN02851099
WM 06.33VGIIArubaNA1953PRJNA388113SAMN07738542
WM 06.8VGIIUruguayEnvironmental1996PRJNA388113SAMN07738543
WM 08.309VGIIAustraliaVeterinary1997PRJNA244927SAMN02851100
WM 08.311VGIIAustraliaVeterinary1996PRJNA244927SAMN02851101
WM 09.152VGIIAustraliaEnvironmental2009PRJNA244927SAMN02851103
WM 09.83VGIIAustraliaHuman1985PRJNA388113SAMN07738544
WM 09.94VGIIAustraliaVeterinary2001PRJNA244927SAMN02851102
WM 11.65VGIIAustraliaVeterinary2011PRJNA244927SAMN02851104
WM 178VGIIAustraliaHuman1991PRJNA244927SAMN02851073
WM 1850VGIIVenezuelaHuman1999PRJNA244927SAMN02851074
WM 1851VGIIVenezuelaHuman1999PRJNA244927SAMN02851075
WM 3032VGIIAustraliaHuman1983PRJNA244927SAMN02851076
HL A2VGIIBrazilHumanPre-2008PRJNA244927SAMN02851065
HL A4VGIIUruguayEnvironmental1996PRJNA244927SAMN02851066
HL A5VGIIBrazilEnvironmentalPre-2008PRJNA244927SAMN02851067
HL A6VGIIArubaVeterinary1953PRJNA244927SAMN02851068
HL A8VGIIBrazilEnvironmentalPre-2008PRJNA244927SAMN02851069
HL B11VGIIGreeceHuman1996PRJNA244927SAMN02851071
HL B12VGIIGreeceHuman1998PRJNA244927SAMN02851072
HL B2VGIIBrazilVeterinary2000PRJNA244927SAMN02851070
  • a The 22 samples newly sequenced for this study have BioProject accession number PRJNA388113.

  • b NA, not available (year of collection or sample source is unknown).

  • c NS, Canada, Nova Scotia, Canada.

  • d N. Carolina, North Carolina.