TABLE 2

Summary of Verrucomicrobia MAGsa

GenomeIMG taxon
OID
SubdivisionRecovered
MAG size
(Mbp)b
Genome
completeness
estimate (%)c
Genome
contamination
estimate (%)c
GC
content
(%)
Coding
base
(%)
Gene
count
Normalized coverage
depthd
MedianMeanCoefficient of
variation (%)
ME3880 2582580573 1 1.6 70 2 58 90.9 1,585 0.2 2.9 217
TH2746258258066416.58136286.75,4303.34.782
ME12612 2582580523 1 2.2 79 3 59 89.0 2,335 0.0 0.9 261
ME12173 2582580521 1 2.1 63 3 52 91.3 2,070 0.0 0.8 583
TE4605258258063814.79105991.14,3801.04.8198
ME6381 2582580593 1 2.4 62 0 57 92.5 2,221 0.0 0.4 285
ME8366 2582580607 2 3.6 87 5 63 87.4 3,450 0.0 1.2 326
TH2747258258066535.29385889.64,8461.82.899
TH3004258258066834.59365791.43,7981.95.8139
TH0989255692115337.29186290.35,5836.16.361
TH2519259333918141.86924294.31,6546.26.760
TE1800259333918942.28424294.31,99810.811.377
TH4590258258068843.38716590.73,1322.43.699
ME2014 2582580546 4 1.9 77 5 66 93.7 1,700 1.0 3.3 174
ME12657 2582580524 4 1.9 81 7 68 94.0 1,838 0.0 0.8 344
TE1301258258061642.09505494.71,9434.114.2187
TH40932582580682Unclassified4.77764886.53,9824.33.961
ME30509 2582580559 Unclassified 1.2 51 2 63 92.3 1,160 0.0 0.5 479
TH48202582580691Unclassified3.05636386.72,7941.02.1110
  • a MAGs from Lake Mendota are indicated in boldface.

  • b Recovered MAG size data represent the sum of the length of all contigs within a MAG.

  • c Genome completeness and contamination were estimated with checkM using Verrucomicrobia-specific marker gene sets.

  • d Normalized coverage depths of MAGs were calculated from the 94, 45, or 45 individual ME, TE, or TH metagenomes, respectively, and were used to comparatively infer relative population abundances at the different sampling points. In addition to the median and mean coverage depths, the coefficient of variation is also shown to indicate variation among the sampling points.