TABLE 2

Codon position of VP1 sequences (1,337 nucleotides) with positive selection

Positively selected siteMethod(s) (P value)Domain
24MEMEa (0.015)N terminus
78iFELb (0.015)Shell
275MEME (0.016)P1
344MEME (0.039)P2 (surface)
345iFEL (0.01), MEME (0.020)P2 (surface)
384MEME (0.01)P2 (surface)
385MEME (0.024)P2 (surface)
397iFEL (0.045)P2 (surface)
  • a MEME, mixed-effect model of evolution.

  • b iFEL, internal fixed-effect likelihood methods.