TABLE 1

Taxonomic and genomic information for the 43 oomycete and SAR species in this analysisa

Species nameCladeOrderClassReferenceGene
Albugo candida NA Albuginales Oomycota Links et al. 2011 (73)13310
Albugo labiachii NA Albuginales Oomycota Kemen et al. 2011 (74)13804
Hyaloperonospora arabidopsidis NA Peronosporales Oomycota Baxter et al. 2010 (71)14321
Phytophthora agathidicida Clade 5 Peronosporales Oomycota Studholme et al. 2016 (70)14110*
Phytophthora capsici Clade 2 Peronosporales Oomycota Lamour et al. 2012 (72)19805
Phytophthora cinnamomi Clade 7 Peronosporales Oomycota Studholme et al. 2016 (70)12942*
Phytophthora cryptogea Clade 8 Peronosporales Oomycota Feau et al. 2016 (75)11876*
Phytophthora fragariae Clade 7 Peronosporales Oomycota Gao et al. 2015 (76)13361*
Phytophthora infestans Clade 1 Peronosporales Oomycota Haas et al. 2009 (69)17797
Phytophthora kernoviae Clade 10 Peronosporales Oomycota Sambles et al. 2015 (77)10650
Phytophthora lateralis Clade 8 Peronosporales Oomycota Quinn et al. 2013 (78)11635
Phytophthora multivora Clade 2 Peronosporales Oomycota Studholme et al. 2016 (70)15006*
Phytophthora nicotianae Clade 1 Peronosporales Oomycota Liu et al. 2016 (79)10521
Phytophthora parasitica Clade 1 Peronosporales Oomycota Broad Institute (INRA-310 v. 3)27942
Phytophthora pinifolia Clade 6 Peronosporales Oomycota Feau et al. 2016 (75)19533*
Phytophthora pluvialis Clade 3 Peronosporales Oomycota Studholme et al. 2016 (70)18426*
Phytophthora pisi Clade 7 Peronosporales Oomycota PRJEB6298 15495*
Phytophthora ramorum Clade 8 Peronosporales Oomycota Tyler et al. 2006 (66)15743
Phytophthora rubi Clade 7 Peronosporales Oomycota PRJNA244739 15462*
Phytophthora sojae Clade 7 Peronosporales Oomycota Tyler et al. 2006 (66)26584
Phytophthora taxon TotaraClade 3 Peronosporales Oomycota Studholme et al. 2016 (70)16691*
Plasmopara halstedii NA Peronosporales Oomycota Sharma et al. 2015 (80)15469
Plasmopara viticola NA Peronosporales Oomycota PRJNA329579 12048*
Phytopythium vexans NA Peronosporales Oomycota Adhikari et al. 2013 (67)11958
Pilasporangium apinafurcum NA Pythiales Oomycota PRJDB3797 13184*
Pythium aphanidermatum Clade A Pythiales Oomycota Adhikari et al. 2013 (67)12312
Pythium arrhenomanes Clade B Pythiales Oomycota Adhikari et al. 2013 (67)13805
Pythium insidiosum Clade C Pythiales Oomycota Rujirawat et al. 2015 (81)19290*
Pythium irregulare Clade F Pythiales Oomycota Adhikari et al. 2013 (67)13805
Pythium iwayami Clade G Pythiales Oomycota Adhikari et al. 2013 (67)14875
Pythium oligandrum Clade D Pythiales Oomycota Berger et al. 2016 (82)14292*
Pythium ultimum var. sporangiiferumClade I Pythiales Oomycota Adhikari et al. 2013 (67)14096
Pythium ultimum var. ultimumClade I Pythiales Oomycota Lévesque et al. 2010 (68)15323
Aphanomyces astaci NA Saprolegniales Oomycota Broad Institute (APO3 v.2)26259
Aphanomyces invadans NA Saprolegniales Oomycota Broad Institute (9901 v.2)20816
Saprolegnia diclina NA Saprolegniales Oomycota PRJNA168273 18229
Saprolegnia parasitica NA Saprolegniales Oomycota Jiang et al. 2013 (83)20121
Aureococcus anophagefferns NA Pelagomonadales Pelagophyceae Gobler et al. 2011 (84)11501
Ectocarpus siliculosus NA Ectocarpales Phaeophyceae Cock et al. 2010 (87)16269
Phaeodactylum tricornutum NA Naviculales Bacillariophyceae Bowler et al. 2008 (85)10402
Thalassiosira psuedonana NA Thalassiosirales Coscinodiscophyceae Armbrust et al. 2004 (86)11776
Paramecium tetraurelia NA Peniculida Oligohymenophorea Aury et al. 2006 (88)39580
Bigelowiella natans NA Chlorarachniophyceae Cercozoa Curtis et al. 2012 (89)21708
  • a Protein counts generated in this study from assembly data are highlighted with an asterisk (*). References are to the genome publications where possible and otherwise to the NCBI BioProject identifier or the Broad Institute strain identifier and assembly version. NA, not applicable.