Skip to main content
  • ASM Journals
    • Antimicrobial Agents and Chemotherapy
    • Applied and Environmental Microbiology
    • Clinical Microbiology Reviews
    • Clinical and Vaccine Immunology
    • EcoSal Plus
    • Eukaryotic Cell
    • Infection and Immunity
    • Journal of Bacteriology
    • Journal of Clinical Microbiology
    • Journal of Microbiology & Biology Education
    • Journal of Virology
    • mBio
    • Microbiology and Molecular Biology Reviews
    • Microbiology Resource Announcements
    • Microbiology Spectrum
    • Molecular and Cellular Biology
    • mSphere
    • mSystems
  • Log in
  • My alerts
  • My Cart

Main menu

  • Home
  • Articles
    • Latest Articles
    • COVID-19 Research and News from ASM Journals
    • mSphere of Influence: Commentaries from Early Career Microbiologists
    • Archive
  • Topics
    • Applied and Environmental Science
    • Clinical Science and Epidemiology
    • Ecological and Evolutionary Science
    • Host-Microbe Biology
    • Molecular Biology and Physiology
    • Therapeutics and Prevention
  • For Authors
    • Getting Started
    • Submit a Manuscript
    • Scope
    • Editorial Policy
    • Submission, Review, & Publication Processes
    • Organization and Format
    • Errata, Author Corrections, Retractions
    • Illustrations and Tables
    • Nomenclature
    • Abbreviations and Conventions
    • Publication Fees
    • Ethics Resources and Policies
  • About the Journal
    • About mSphere
    • Editor in Chief
    • Board of Editors
    • For Reviewers
    • For the Media
    • For Librarians
    • For Advertisers
    • Alerts
    • RSS
    • FAQ
  • ASM Journals
    • Antimicrobial Agents and Chemotherapy
    • Applied and Environmental Microbiology
    • Clinical Microbiology Reviews
    • Clinical and Vaccine Immunology
    • EcoSal Plus
    • Eukaryotic Cell
    • Infection and Immunity
    • Journal of Bacteriology
    • Journal of Clinical Microbiology
    • Journal of Microbiology & Biology Education
    • Journal of Virology
    • mBio
    • Microbiology and Molecular Biology Reviews
    • Microbiology Resource Announcements
    • Microbiology Spectrum
    • Molecular and Cellular Biology
    • mSphere
    • mSystems

User menu

  • Log in
  • My alerts
  • My Cart

Search

  • Advanced search
mSphere
publisher-logosite-logo

Advanced Search

  • Home
  • Articles
    • Latest Articles
    • COVID-19 Research and News from ASM Journals
    • mSphere of Influence: Commentaries from Early Career Microbiologists
    • Archive
  • Topics
    • Applied and Environmental Science
    • Clinical Science and Epidemiology
    • Ecological and Evolutionary Science
    • Host-Microbe Biology
    • Molecular Biology and Physiology
    • Therapeutics and Prevention
  • For Authors
    • Getting Started
    • Submit a Manuscript
    • Scope
    • Editorial Policy
    • Submission, Review, & Publication Processes
    • Organization and Format
    • Errata, Author Corrections, Retractions
    • Illustrations and Tables
    • Nomenclature
    • Abbreviations and Conventions
    • Publication Fees
    • Ethics Resources and Policies
  • About the Journal
    • About mSphere
    • Editor in Chief
    • Board of Editors
    • For Reviewers
    • For the Media
    • For Librarians
    • For Advertisers
    • Alerts
    • RSS
    • FAQ
Research Article | Ecological and Evolutionary Science

TaxAss: Leveraging a Custom Freshwater Database Achieves Fine-Scale Taxonomic Resolution

Robin R. Rohwer, Joshua J. Hamilton, Ryan J. Newton, Katherine D. McMahon
Jorge M. Rodrigues, Editor
Robin R. Rohwer
aEnvironmental Chemistry and Technology Program, University of Wisconsin—Madison, Madison, Wisconsin, USA
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
  • ORCID record for Robin R. Rohwer
Joshua J. Hamilton
bDepartment of Bacteriology, University of Wisconsin—Madison, Madison, Wisconsin, USA
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
  • ORCID record for Joshua J. Hamilton
Ryan J. Newton
cSchool of Freshwater Sciences, University of Wisconsin—Milwaukee, Milwaukee, Wisconsin, USA
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
  • ORCID record for Ryan J. Newton
Katherine D. McMahon
bDepartment of Bacteriology, University of Wisconsin—Madison, Madison, Wisconsin, USA
dDepartment of Civil and Environmental Engineering, University of Wisconsin—Madison, Madison, Wisconsin, USA
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
  • ORCID record for Katherine D. McMahon
Jorge M. Rodrigues
University of California, Davis
Roles: Editor
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
DOI: 10.1128/mSphere.00327-18
  • Article
  • Figures & Data
  • Info & Metrics
  • PDF
Loading

Article Information

DOI 
https://doi.org/10.1128/mSphere.00327-18
PubMed 
30185512

Published By 
American Society for Microbiology Journals
History 
  • Received June 15, 2018
  • Accepted July 23, 2018
  • Published online September 5, 2018.

Copyright & Usage 
Copyright © 2018 Rohwer et al. This is an open-access article distributed under the terms of the Creative Commons Attribution 4.0 International license.
Editors and / or Reviewers 
  • Jorge M. Rodrigues, Editor, University of California, Davis

Author Information

  1. Robin R. Rohwera,
  2. Joshua J. Hamiltonb,
  3. Ryan J. Newtonc and
  4. Katherine D. McMahonb,d
  1. aEnvironmental Chemistry and Technology Program, University of Wisconsin—Madison, Madison, Wisconsin, USA
  2. bDepartment of Bacteriology, University of Wisconsin—Madison, Madison, Wisconsin, USA
  3. cSchool of Freshwater Sciences, University of Wisconsin—Milwaukee, Milwaukee, Wisconsin, USA
  4. dDepartment of Civil and Environmental Engineering, University of Wisconsin—Madison, Madison, Wisconsin, USA
  • Address correspondence to Robin R. Rohwer, Robin.Rohwer{at}gmail.com.
  • Citation Rohwer RR, Hamilton JJ, Newton RJ, McMahon KD. 2018. TaxAss: leveraging a custom freshwater database achieves fine-scale taxonomic resolution. mSphere 3:e00327-18. https://doi.org/10.1128/mSphere.00327-18.

Article usage

Article usage: August 2018 to April 2021

Rendering graph...
AbstractFullPdf
Aug 2018021
Sep 2018047257
Oct 2018111130
Nov 2018018046
Dec 201807041
Jan 2019109451
Feb 201966117
Mar 201935325
Apr 201994916
May 201923817
Jun 20191212318
Jul 201926417
Aug 2019104718
Sep 201983211
Oct 201924420
Nov 201942915
Dec 201932913
Jan 202074112
Feb 202075422
Mar 202062513
Apr 2020510029
May 202097721
Jun 202097626
Jul 2020109719
Aug 202055814
Sep 20201811922
Oct 202010709
Nov 2020166330
Dec 2020157813
Jan 2021114012
Feb 202115411
Mar 2021105417
Apr 20213276
PreviousNext
Back to top
Download PDF
Citation Tools
TaxAss: Leveraging a Custom Freshwater Database Achieves Fine-Scale Taxonomic Resolution
Robin R. Rohwer, Joshua J. Hamilton, Ryan J. Newton, Katherine D. McMahon
mSphere Sep 2018, 3 (5) e00327-18; DOI: 10.1128/mSphere.00327-18

Citation Manager Formats

  • BibTeX
  • Bookends
  • EasyBib
  • EndNote (tagged)
  • EndNote 8 (xml)
  • Medlars
  • Mendeley
  • Papers
  • RefWorks Tagged
  • Ref Manager
  • RIS
  • Zotero
Print
Alerts
Sign In to Email Alerts with your Email Address
Email

Thank you for sharing this mSphere article.

NOTE: We request your email address only to inform the recipient that it was you who recommended this article, and that it is not junk mail. We do not retain these email addresses.

Enter multiple addresses on separate lines or separate them with commas.
TaxAss: Leveraging a Custom Freshwater Database Achieves Fine-Scale Taxonomic Resolution
(Your Name) has forwarded a page to you from mSphere
(Your Name) thought you would be interested in this article in mSphere.
CAPTCHA
This question is for testing whether or not you are a human visitor and to prevent automated spam submissions.
Share
TaxAss: Leveraging a Custom Freshwater Database Achieves Fine-Scale Taxonomic Resolution
Robin R. Rohwer, Joshua J. Hamilton, Ryan J. Newton, Katherine D. McMahon
mSphere Sep 2018, 3 (5) e00327-18; DOI: 10.1128/mSphere.00327-18
del.icio.us logo Digg logo Reddit logo Twitter logo CiteULike logo Facebook logo Google logo Mendeley logo
  • Top
  • Article
    • ABSTRACT
    • INTRODUCTION
    • RESULTS
    • DISCUSSION
    • MATERIALS AND METHODS
    • ACKNOWLEDGMENTS
    • FOOTNOTES
    • REFERENCES
  • Figures & Data
  • Info & Metrics
  • PDF

KEYWORDS

16S rRNA gene
amplicon sequencing
freshwater
limnology
microbial ecology
taxonomy
taxonomy assignment
taxonomy database

Related Articles

Cited By...

About

  • About mSphere
  • Board of Editors
  • Policies
  • For Reviewers
  • For the Media
  • Embargo Policy
  • For Librarians
  • For Advertisers
  • Alerts
  • RSS
  • FAQ
  • Permissions
  • Journal Announcements

Authors

  • ASM Author Center
  • Submit a Manuscript
  • Author Warranty
  • Types of Articles
  • Getting Started
  • Ethics
  • Contact Us

Follow #mSphereJ

@ASMicrobiology

       

 

Website feedback

ASM Journals

ASM journals are the most prominent publications in the field, delivering up-to-date and authoritative coverage of both basic and clinical microbiology.

About ASM | Contact Us | Press Room

 

ASM is a member of

Scientific Society Publisher Alliance

 

American Society for Microbiology
1752 N St. NW
Washington, DC 20036
Phone: (202) 737-3600

Copyright © 2021 American Society for Microbiology | Privacy Policy | Website feedback

Online ISSN: 2379-5042