TABLE 1 

Taxonomic and genomic information for the 43 oomycete and SAR species in this analysisa

Species nameCladeOrderClassReferenceGene
Albugo candidaNAAlbuginalesOomycotaLinks et al. 2011 (73)13310
Albugo labiachiiNAAlbuginalesOomycotaKemen et al. 2011 (74)13804
Hyaloperonospora arabidopsidisNAPeronosporalesOomycotaBaxter et al. 2010 (71)14321
Phytophthora agathidicidaClade 5PeronosporalesOomycotaStudholme et al. 2016 (70)14110*
Phytophthora capsiciClade 2PeronosporalesOomycotaLamour et al. 2012 (72)19805
Phytophthora cinnamomiClade 7PeronosporalesOomycotaStudholme et al. 2016 (70)12942*
Phytophthora cryptogeaClade 8PeronosporalesOomycotaFeau et al. 2016 (75)11876*
Phytophthora fragariaeClade 7PeronosporalesOomycotaGao et al. 2015 (76)13361*
Phytophthora infestansClade 1PeronosporalesOomycotaHaas et al. 2009 (69)17797
Phytophthora kernoviaeClade 10PeronosporalesOomycotaSambles et al. 2015 (77)10650
Phytophthora lateralisClade 8PeronosporalesOomycotaQuinn et al. 2013 (78)11635
Phytophthora multivoraClade 2PeronosporalesOomycotaStudholme et al. 2016 (70)15006*
Phytophthora nicotianaeClade 1PeronosporalesOomycotaLiu et al. 2016 (79)10521
Phytophthora parasiticaClade 1PeronosporalesOomycotaBroad Institute (INRA-310 v. 3)27942
Phytophthora pinifoliaClade 6PeronosporalesOomycotaFeau et al. 2016 (75)19533*
Phytophthora pluvialisClade 3PeronosporalesOomycotaStudholme et al. 2016 (70)18426*
Phytophthora pisiClade 7PeronosporalesOomycotaPRJEB629815495*
Phytophthora ramorumClade 8PeronosporalesOomycotaTyler et al. 2006 (66)15743
Phytophthora rubiClade 7PeronosporalesOomycotaPRJNA24473915462*
Phytophthora sojaeClade 7PeronosporalesOomycotaTyler et al. 2006 (66)26584
Phytophthora taxon TotaraClade 3PeronosporalesOomycotaStudholme et al. 2016 (70)16691*
Plasmopara halstediiNAPeronosporalesOomycotaSharma et al. 2015 (80)15469
Plasmopara viticolaNAPeronosporalesOomycotaPRJNA32957912048*
Phytopythium vexansNAPeronosporalesOomycotaAdhikari et al. 2013 (67)11958
Pilasporangium apinafurcumNAPythialesOomycotaPRJDB379713184*
Pythium aphanidermatumClade APythialesOomycotaAdhikari et al. 2013 (67)12312
Pythium arrhenomanesClade BPythialesOomycotaAdhikari et al. 2013 (67)13805
Pythium insidiosumClade CPythialesOomycotaRujirawat et al. 2015 (81)19290*
Pythium irregulareClade FPythialesOomycotaAdhikari et al. 2013 (67)13805
Pythium iwayamiClade GPythialesOomycotaAdhikari et al. 2013 (67)14875
Pythium oligandrumClade DPythialesOomycotaBerger et al. 2016 (82)14292*
Pythium ultimum var. sporangiiferumClade IPythialesOomycotaAdhikari et al. 2013 (67)14096
Pythium ultimum var. ultimumClade IPythialesOomycotaLévesque et al. 2010 (68)15323
Aphanomyces astaciNASaprolegnialesOomycotaBroad Institute (APO3 v.2)26259
Aphanomyces invadansNASaprolegnialesOomycotaBroad Institute (9901 v.2)20816
Saprolegnia diclinaNASaprolegnialesOomycotaPRJNA16827318229
Saprolegnia parasiticaNASaprolegnialesOomycotaJiang et al. 2013 (83)20121
Aureococcus anophageffernsNAPelagomonadalesPelagophyceaeGobler et al. 2011 (84)11501
Ectocarpus siliculosusNAEctocarpalesPhaeophyceaeCock et al. 2010 (87)16269
Phaeodactylum tricornutumNANaviculalesBacillariophyceaeBowler et al. 2008 (85)10402
Thalassiosira psuedonanaNAThalassiosiralesCoscinodiscophyceaeArmbrust et al. 2004 (86)11776
Paramecium tetraureliaNAPeniculidaOligohymenophoreaAury et al. 2006 (88)39580
Bigelowiella natansNAChlorarachniophyceaeCercozoaCurtis et al. 2012 (89)21708
  • a Protein counts generated in this study from assembly data are highlighted with an asterisk (*). References are to the genome publications where possible and otherwise to the NCBI BioProject identifier or the Broad Institute strain identifier and assembly version. NA, not applicable.